Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g02154.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2791
ACGTcount: A:0.32, C:0.10, G:0.21, T:0.37


Found at i:623 original size:27 final size:26

Alignment explanation


    Indices: 592--687  Score: 95
    Period size: 27  Copynumber: 3.6  Consensus size: 26

        582 TTTGAGGGAT

                                       
        592 GCACTAAGTGTGCGAATTTGATACTGA
          1 GCACTAAGTGTGCGAATTTGAT-CTGA

                           *  *   * * 
        619 GCACTAAGTGTGCGAGTTGGATTTAA
          1 GCACTAAGTGTGCGAATTTGATCTGA

                  *     *         *     
        645 GCACTATGTGTGTGAATTAAT-TTCTGA
          1 GCACTAAGTGTGCGAATT--TGATCTGA

                            
        672 GCACTAAGTGTGCGAA
          1 GCACTAAGTGTGCGAA

        688 ATCAGTTATT


Statistics
Matches: 54,  Mismatches: 13, Indels: 4
        0.76            0.18        0.06

Matches are distributed among these distances:
  26   17  0.31
  27   37  0.69

ACGTcount: A:0.28, C:0.14, G:0.27, T:0.31


Consensus pattern (26 bp):   
GCACTAAGTGTGCGAATTTGATCTGA
Done.