Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g02177.P2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7630
ACGTcount: A:0.32, C:0.17, G:0.19, T:0.32


Found at i:4983 original size:21 final size:21

Alignment explanation


    Indices: 4957--4997  Score: 57
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       4947 TCCAGCAACC

                                  
       4957 AAACAC-TCTCATTCCAGCTCT
          1 AAACACTTCT-ATTCCAGCTCT

                           *    
       4978 AAACACTTCTATTCCGGCTC
          1 AAACACTTCTATTCCAGCTC

       4998 CTGTCCAGCA


Statistics
Matches: 18,  Mismatches: 1, Indels: 2
        0.86            0.05        0.10

Matches are distributed among these distances:
  21   15  0.83
  22    3  0.17

ACGTcount: A:0.27, C:0.37, G:0.07, T:0.29


Consensus pattern (21 bp):   
AAACACTTCTATTCCAGCTCT
Done.