Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g02193.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3030
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.31


Found at i:2127 original size:13 final size:13

Alignment explanation


    Indices: 2109--2133  Score: 50
    Period size: 13  Copynumber: 1.9  Consensus size: 13

       2099 AATCAGGGCA

                         
       2109 TAGAGGAAAAAGG
          1 TAGAGGAAAAAGG

                        
       2122 TAGAGGAAAAAG
          1 TAGAGGAAAAAG

       2134 AGTTGAAGTG


Statistics
Matches: 12,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   12  1.00

ACGTcount: A:0.56, C:0.00, G:0.36, T:0.08


Consensus pattern (13 bp):   
TAGAGGAAAAAGG
Done.