Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g02193.F6

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3270
ACGTcount: A:0.29, C:0.18, G:0.21, T:0.32


Found at i:2127 original size:13 final size:13

Alignment explanation


    Indices: 2109--2136  Score: 56
    Period size: 13  Copynumber: 2.2  Consensus size: 13

       2099 AATCAGGGCA

                         
       2109 TAGAGGAAAAAGG
          1 TAGAGGAAAAAGG

                         
       2122 TAGAGGAAAAAGG
          1 TAGAGGAAAAAGG

              
       2135 TA
          1 TA

       2137 AAGAGTTACT


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   15  1.00

ACGTcount: A:0.54, C:0.00, G:0.36, T:0.11


Consensus pattern (13 bp):   
TAGAGGAAAAAGG
Done.