Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g02196.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3118
ACGTcount: A:0.27, C:0.18, G:0.21, T:0.34


Found at i:263 original size:21 final size:20

Alignment explanation


    Indices: 239--277  Score: 69
    Period size: 21  Copynumber: 1.9  Consensus size: 20

        229 TGCCGTTACC

                                 
        239 TTTTTATTTCTTTCCTTTTAT
          1 TTTTTATTTCTTT-CTTTTAT

                              
        260 TTTTTATTTCTTTCTTTT
          1 TTTTTATTTCTTTCTTTT

        278 CATGTTTGCC


Statistics
Matches: 18,  Mismatches: 0, Indels: 1
        0.95            0.00        0.05

Matches are distributed among these distances:
  20    5  0.28
  21   13  0.72

ACGTcount: A:0.08, C:0.13, G:0.00, T:0.79


Consensus pattern (20 bp):   
TTTTTATTTCTTTCTTTTAT
Done.