Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g02207.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3004
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.31


Found at i:2022 original size:33 final size:33

Alignment explanation


    Indices: 1980--2046  Score: 134
    Period size: 33  Copynumber: 2.0  Consensus size: 33

       1970 ATGTTGCAGA

                                             
       1980 TCCTTAGGCACTAATGACTGAAGTAAAACATAG
          1 TCCTTAGGCACTAATGACTGAAGTAAAACATAG

                                             
       2013 TCCTTAGGCACTAATGACTGAAGTAAAACATAG
          1 TCCTTAGGCACTAATGACTGAAGTAAAACATAG

             
       2046 T
          1 T

       2047 AGAACACATT


Statistics
Matches: 34,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  33   34  1.00

ACGTcount: A:0.39, C:0.18, G:0.18, T:0.25


Consensus pattern (33 bp):   
TCCTTAGGCACTAATGACTGAAGTAAAACATAG
Done.