Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g02242.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5915
ACGTcount: A:0.31, C:0.14, G:0.18, T:0.37


Found at i:1288 original size:26 final size:26

Alignment explanation


    Indices: 1253--1308  Score: 87
    Period size: 26  Copynumber: 2.2  Consensus size: 26

       1243 AGTTTCAGTA

                               *      
       1253 AGTTTAAGGTAGGCAACTCGCTT-AG
          1 AGTTTAAGGTAGGCAACTCCCTTAAG

                                       
       1278 AGTTTCAAGGTAGGCAACTCCCTTAAG
          1 AGTTT-AAGGTAGGCAACTCCCTTAAG

                
       1305 AGTT
          1 AGTT

       1309 CAATAACCAC


Statistics
Matches: 28,  Mismatches: 1, Indels: 2
        0.90            0.03        0.06

Matches are distributed among these distances:
  25    5  0.18
  26   17  0.61
  27    6  0.21

ACGTcount: A:0.29, C:0.18, G:0.25, T:0.29


Consensus pattern (26 bp):   
AGTTTAAGGTAGGCAACTCCCTTAAG

Found at i:4603 original size:7 final size:7

Alignment explanation


    Indices: 4591--4615  Score: 50
    Period size: 7  Copynumber: 3.6  Consensus size: 7

       4581 TCATTTACTT

                   
       4591 AGTAGAA
          1 AGTAGAA

                   
       4598 AGTAGAA
          1 AGTAGAA

                   
       4605 AGTAGAA
          1 AGTAGAA

                
       4612 AGTA
          1 AGTA

       4616 AGCTTGGTTT


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   7   18  1.00

ACGTcount: A:0.56, C:0.00, G:0.28, T:0.16


Consensus pattern (7 bp):   
AGTAGAA
Done.