Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g02243.M1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3745
ACGTcount: A:0.30, C:0.14, G:0.22, T:0.34


Found at i:1480 original size:26 final size:25

Alignment explanation


    Indices: 1444--1492  Score: 80
    Period size: 26  Copynumber: 1.9  Consensus size: 25

       1434 CAGTAAGCTT

                             *        
       1444 AAGGTAGGCAACTCGCTTAGAGTTTC
          1 AAGGTAGGCAACTC-CTAAGAGTTTC

                                   
       1470 AAGGTAGGCAACTCCTAAGAGTT
          1 AAGGTAGGCAACTCCTAAGAGTT

       1493 AAATAACTAC


Statistics
Matches: 22,  Mismatches: 1, Indels: 1
        0.92            0.04        0.04

Matches are distributed among these distances:
  25    8  0.36
  26   14  0.64

ACGTcount: A:0.31, C:0.18, G:0.27, T:0.24


Consensus pattern (25 bp):   
AAGGTAGGCAACTCCTAAGAGTTTC
Done.