Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g02244.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1715
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30


Found at i:1623 original size:20 final size:20

Alignment explanation


    Indices: 1595--1640  Score: 65
    Period size: 20  Copynumber: 2.3  Consensus size: 20

       1585 TTTGATATTT

                *           *   
       1595 GAAAAGAAAAAGGAAATGAA
          1 GAAAGGAAAAAGGAAAGGAA

                                
       1615 GAAAGGAAAAAGGAAAGGAA
          1 GAAAGGAAAAAGGAAAGGAA

            *     
       1635 AAAAGG
          1 GAAAGG

       1641 GACAGGGTGC


Statistics
Matches: 23,  Mismatches: 3, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  20   23  1.00

ACGTcount: A:0.67, C:0.00, G:0.30, T:0.02


Consensus pattern (20 bp):   
GAAAGGAAAAAGGAAAGGAA
Done.