Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g02252.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1710
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29


Found at i:1529 original size:50 final size:48

Alignment explanation


    Indices: 1454--1557  Score: 190
    Period size: 50  Copynumber: 2.1  Consensus size: 48

       1444 TTGTCCTTTC

                                                              
       1454 TGAACACAATGGGCACCGATGCTAAAATCAGAAGTTGACTTGGGGAAAAA
          1 TGAACACAATGGGCACCGATGCTAAAATCAGAAGTT--CTTGGGGAAAAA

                                                            
       1504 TGAACACAATGGGCACCGATGCTAAAATCAGAAGTTCTTGGGGAAAAA
          1 TGAACACAATGGGCACCGATGCTAAAATCAGAAGTTCTTGGGGAAAAA

                  
       1552 TGAACA
          1 TGAACA

       1558 AGTAATATAT


Statistics
Matches: 54,  Mismatches: 0, Indels: 2
        0.96            0.00        0.04

Matches are distributed among these distances:
  48   18  0.33
  50   36  0.67

ACGTcount: A:0.40, C:0.16, G:0.25, T:0.18


Consensus pattern (48 bp):   
TGAACACAATGGGCACCGATGCTAAAATCAGAAGTTCTTGGGGAAAAA
Done.