Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g02254.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2435
ACGTcount: A:0.33, C:0.17, G:0.21, T:0.29


Found at i:1333 original size:38 final size:38

Alignment explanation


    Indices: 1282--1358  Score: 145
    Period size: 38  Copynumber: 2.0  Consensus size: 38

       1272 TTGGAAGGTA

                                          *       
       1282 TTGCTAACCTTTTATTAGGTGTGGCTCATTTGACACAT
          1 TTGCTAACCTTTTATTAGGTGTGGCTCATTCGACACAT

                                                  
       1320 TTGCTAACCTTTTATTAGGTGTGGCTCATTCGACACAT
          1 TTGCTAACCTTTTATTAGGTGTGGCTCATTCGACACAT

             
       1358 T
          1 T

       1359 CAAAGTCAGC


Statistics
Matches: 38,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  38   38  1.00

ACGTcount: A:0.21, C:0.19, G:0.18, T:0.42


Consensus pattern (38 bp):   
TTGCTAACCTTTTATTAGGTGTGGCTCATTCGACACAT
Done.