Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Ga07g02267.F1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 580
Length: 967
ACGTcount: A:0.32, C:0.22, G:0.20, T:0.26
Found at i:638 original size:105 final size:106
Alignment explanation
Indices: 449--769 Score: 428
Period size: 105 Copynumber: 3.0 Consensus size: 106
439 TAGTAATTCC
* * *
449 ATCACACTTTGACTGGCATGAGTACGGGCTAGGATACAGCTGTGTGCCTCACATCCAATGCCCAC
1 ATCACACTTTGAATGGCATGAGCACGGGCTAGG--ACAGCTGTGTGCCTCACATCCAATGCTCAC
* * *
514 ACAGTTTACGACACGGGCATGTCACTTGGCCATGTGTGCCACA
64 ACGGCTTACAACACGGGCATGTCACTTGGCCATGTGTGCCACA
* * * * *
557 ATCACACTTTGATTGGCATGAGCATGGGTTAGGACA-CAGTGTGCCTCACATTCAATGCTCACAC
1 ATCACACTTTGAATGGCATGAGCACGGGCTAGGACAGCTGTGTGCCTCACATCCAATGCTCACAC
** *
621 GGCTTACAACATAGGCATGTCACTTGGCCATGTGTGCAACA
66 GGCTTACAACACGGGCATGTCACTTGGCCATGTGTGCCACA
* * *
662 ATCACACTTTGAATGGCATGAGCACAGGCTGGGACATAGCTGTGTGCCTCACATCCAATGCTTAC
1 ATCACACTTTGAATGGCATGAGCACGGGCTAGGAC--AGCTGTGTGCCTCACATCCAATGCTCAC
* *
727 ACGGGTTACAACACGGGCATGTCAATTGGCCATGTGTGCCACA
64 ACGGCTTACAACACGGGCATGTCACTTGGCCATGTGTGCCACA
770 CGGCCTGGCC
Statistics
Matches: 184, Mismatches: 26, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
105 90 0.49
106 3 0.02
107 1 0.01
108 90 0.49
ACGTcount: A:0.26, C:0.26, G:0.24, T:0.24
Consensus pattern (106 bp):
ATCACACTTTGAATGGCATGAGCACGGGCTAGGACAGCTGTGTGCCTCACATCCAATGCTCACAC
GGCTTACAACACGGGCATGTCACTTGGCCATGTGTGCCACA
Done.