Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g02290.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2999
ACGTcount: A:0.26, C:0.22, G:0.20, T:0.33


Found at i:391 original size:12 final size:13

Alignment explanation


    Indices: 376--408  Score: 52
    Period size: 12  Copynumber: 2.7  Consensus size: 13

        366 CCCTTTCTCT

                         
        376 TTCCTC-CTTTCC
          1 TTCCTCTCTTTCC

                         
        388 TTCCTCTCTTTCC
          1 TTCCTCTCTTTCC

                     
        401 -TCCTCTCT
          1 TTCCTCTCT

        409 CTCTCTTTTA


Statistics
Matches: 20,  Mismatches: 0, Indels: 2
        0.91            0.00        0.09

Matches are distributed among these distances:
  12   14  0.70
  13    6  0.30

ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52


Consensus pattern (13 bp):   
TTCCTCTCTTTCC

Found at i:709 original size:21 final size:21

Alignment explanation


    Indices: 668--709  Score: 50
    Period size: 21  Copynumber: 2.0  Consensus size: 21

        658 TCGTCTCAGA

                      *     *    
        668 TTATTGGGTTTTGCTTTTTAT
          1 TTATTGGGTTATGCTTATTAT

                                  
        689 TTATTGGGTTAATGC-TATTAT
          1 TTATTGGGTT-ATGCTTATTAT

        710 CTTTAAGTTG


Statistics
Matches: 18,  Mismatches: 2, Indels: 2
        0.82            0.09        0.09

Matches are distributed among these distances:
  21   15  0.83
  22    3  0.17

ACGTcount: A:0.17, C:0.05, G:0.19, T:0.60


Consensus pattern (21 bp):   
TTATTGGGTTATGCTTATTAT
Done.