Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g02296.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2713
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.32


Found at i:1701 original size:26 final size:26

Alignment explanation


    Indices: 1665--1716  Score: 104
    Period size: 26  Copynumber: 2.0  Consensus size: 26

       1655 ACAGGTAGAT

                                      
       1665 CAAACTTGTTTCGATCTTCATGCATA
          1 CAAACTTGTTTCGATCTTCATGCATA

                                      
       1691 CAAACTTGTTTCGATCTTCATGCATA
          1 CAAACTTGTTTCGATCTTCATGCATA

       1717 TCTTTATTTA


Statistics
Matches: 26,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  26   26  1.00

ACGTcount: A:0.27, C:0.23, G:0.12, T:0.38


Consensus pattern (26 bp):   
CAAACTTGTTTCGATCTTCATGCATA
Done.