Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g02307.P3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6873
ACGTcount: A:0.30, C:0.21, G:0.17, T:0.32


Found at i:628 original size:33 final size:32

Alignment explanation


    Indices: 581--648  Score: 118
    Period size: 33  Copynumber: 2.1  Consensus size: 32

        571 ACCCTTTTGA

                                             
        581 TTCAAAGCAATCTAAGTGGATTATTGGAGGCCT
          1 TTCAAAGCAATCTAAGTGGATTATTGGAGG-CT

                *                           
        614 TTCAGAGCAATCTAAGTGGATTATTGGAGGCT
          1 TTCAAAGCAATCTAAGTGGATTATTGGAGGCT

               
        646 TTC
          1 TTC

        649 TTCTTTTATT


Statistics
Matches: 34,  Mismatches: 1, Indels: 1
        0.94            0.03        0.03

Matches are distributed among these distances:
  32    5  0.15
  33   29  0.85

ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32


Consensus pattern (32 bp):   
TTCAAAGCAATCTAAGTGGATTATTGGAGGCT
Done.