Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g02343.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1854
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.28


Found at i:270 original size:18 final size:18

Alignment explanation


    Indices: 231--271  Score: 64
    Period size: 18  Copynumber: 2.3  Consensus size: 18

        221 GCCTGATGGT

                          *  *
        231 TCTTCTCCATCATCTTCC
          1 TCTTCTCCATCATCATCA

                              
        249 TCTTCTCCATCATCATCA
          1 TCTTCTCCATCATCATCA

                 
        267 TCTTC
          1 TCTTC

        272 CAAAGCTTTG


Statistics
Matches: 21,  Mismatches: 2, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  18   21  1.00

ACGTcount: A:0.15, C:0.41, G:0.00, T:0.44


Consensus pattern (18 bp):   
TCTTCTCCATCATCATCA
Done.