Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g02353.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 490

Length: 817
ACGTcount: A:0.23, C:0.20, G:0.26, T:0.30


Found at i:659 original size:7 final size:7

Alignment explanation


    Indices: 648--680  Score: 57
    Period size: 7  Copynumber: 4.7  Consensus size: 7

        638 TTTTTTTTTT

                   
        648 TGGGGGG
          1 TGGGGGG

            *      
        655 GGGGGGG
          1 TGGGGGG

                   
        662 TGGGGGG
          1 TGGGGGG

                   
        669 TGGGGGG
          1 TGGGGGG

                 
        676 TGGGG
          1 TGGGG

        681 TTGTATTATG


Statistics
Matches: 24,  Mismatches: 2, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
   7   24  1.00

ACGTcount: A:0.00, C:0.00, G:0.88, T:0.12


Consensus pattern (7 bp):   
TGGGGGG

Done.