Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g02358.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1988
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.37


Found at i:1627 original size:2 final size:2

Alignment explanation


    Indices: 1620--1654  Score: 70
    Period size: 2  Copynumber: 17.5  Consensus size: 2

       1610 TAGTACATAT

                                                                
       1620 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
          1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T

       1655 GTATGTATAT


Statistics
Matches: 33,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   33  1.00

ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51


Consensus pattern (2 bp):   
TC

Found at i:1687 original size:4 final size:4

Alignment explanation


    Indices: 1680--1735  Score: 112
    Period size: 4  Copynumber: 14.0  Consensus size: 4

       1670 TATATAAATT

                                                                       
       1680 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
          1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG

                     
       1728 TATG TATG
          1 TATG TATG

       1736 CATACACACA


Statistics
Matches: 52,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   4   52  1.00

ACGTcount: A:0.25, C:0.00, G:0.25, T:0.50


Consensus pattern (4 bp):   
TATG

Done.