Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g02386.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 556

Length: 927
ACGTcount: A:0.27, C:0.18, G:0.21, T:0.34


Found at i:864 original size:27 final size:27

Alignment explanation


    Indices: 826--880  Score: 110
    Period size: 27  Copynumber: 2.0  Consensus size: 27

        816 TTTTGATATT

                                       
        826 TAGACCTAGTTTTAAACATGGTTGTTC
          1 TAGACCTAGTTTTAAACATGGTTGTTC

                                       
        853 TAGACCTAGTTTTAAACATGGTTGTTC
          1 TAGACCTAGTTTTAAACATGGTTGTTC

             
        880 T
          1 T

        881 TTCTTGATGT


Statistics
Matches: 28,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  27   28  1.00

ACGTcount: A:0.25, C:0.15, G:0.18, T:0.42


Consensus pattern (27 bp):   
TAGACCTAGTTTTAAACATGGTTGTTC
Done.