Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g02386.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 480

Length: 800
ACGTcount: A:0.28, C:0.18, G:0.21, T:0.33


Found at i:737 original size:27 final size:27

Alignment explanation


    Indices: 699--753  Score: 110
    Period size: 27  Copynumber: 2.0  Consensus size: 27

        689 TTTTGATATT

                                       
        699 TAGACCTAGTTTTAAACATGGTTGTTC
          1 TAGACCTAGTTTTAAACATGGTTGTTC

                                       
        726 TAGACCTAGTTTTAAACATGGTTGTTC
          1 TAGACCTAGTTTTAAACATGGTTGTTC

             
        753 T
          1 T

        754 TTCTTGATGT


Statistics
Matches: 28,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  27   28  1.00

ACGTcount: A:0.25, C:0.15, G:0.18, T:0.42


Consensus pattern (27 bp):   
TAGACCTAGTTTTAAACATGGTTGTTC
Done.