Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g02411.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1991
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29


Found at i:9 original size:2 final size:2

Alignment explanation


    Indices: 3--31  Score: 51
    Period size: 2  Copynumber: 15.0  Consensus size: 2

          1 GG

                                                        
          3 GA GA GA GA GA GA GA GA GA GA GA GA -A GA GA
          1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA

         32 CGAACTCTCT


Statistics
Matches: 26,  Mismatches: 0, Indels: 2
        0.93            0.00        0.07

Matches are distributed among these distances:
   1    1  0.04
   2   25  0.96

ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00


Consensus pattern (2 bp):   
GA

Found at i:324 original size:6 final size:6

Alignment explanation


    Indices: 315--339  Score: 50
    Period size: 6  Copynumber: 4.2  Consensus size: 6

        305 GCTCAGTCGA

                                         
        315 AAGCTC AAGCTC AAGCTC AAGCTC A
          1 AAGCTC AAGCTC AAGCTC AAGCTC A

        340 TGCCCAACTC


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   19  1.00

ACGTcount: A:0.36, C:0.32, G:0.16, T:0.16


Consensus pattern (6 bp):   
AAGCTC

Done.