Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g02412.P2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1950
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.32


Found at i:264 original size:23 final size:23

Alignment explanation


    Indices: 235--290  Score: 62
    Period size: 24  Copynumber: 2.4  Consensus size: 23

        225 GTTCAATTCA

                                 *  
        235 TTTATTTATAT-T-ATAAATGCTG
          1 TTTATTTATATCTAATAAAT-ATG

                                     
        257 TATTATTTTATATCTAATAAATATG
          1 T-TTA-TTTATATCTAATAAATATG

                     
        282 TTTATTTAT
          1 TTTATTTAT

        291 GATTCTCTTG


Statistics
Matches: 29,  Mismatches: 1, Indels: 7
        0.78            0.03        0.19

Matches are distributed among these distances:
  22    1  0.03
  23    8  0.28
  24   10  0.34
  25    4  0.14
  26    6  0.21

ACGTcount: A:0.34, C:0.04, G:0.05, T:0.57


Consensus pattern (23 bp):   
TTTATTTATATCTAATAAATATG

Done.