Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g01758.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 648

Length: 1081
ACGTcount: A:0.35, C:0.17, G:0.23, T:0.25


Found at i:928 original size:18 final size:18

Alignment explanation


    Indices: 907--959  Score: 61
    Period size: 18  Copynumber: 2.9  Consensus size: 18

        897 AGAGGGTAAA

                       *   ** 
        907 GATGATGATGATGACTCT
          1 GATGATGATGAAGACGAT

                     *        
        925 GATGATGATCAAGACGAT
          1 GATGATGATGAAGACGAT

                       *     
        943 GATGATGATGAGGACGA
          1 GATGATGATGAAGACGA

        960 CGACGACGAC


Statistics
Matches: 29,  Mismatches: 6, Indels: 0
        0.83            0.17        0.00

Matches are distributed among these distances:
  18   29  1.00

ACGTcount: A:0.34, C:0.09, G:0.32, T:0.25


Consensus pattern (18 bp):   
GATGATGATGAAGACGAT
Done.