Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g02438.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 781

Length: 1303
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29


Found at i:150 original size:22 final size:22

Alignment explanation


    Indices: 110--151  Score: 57
    Period size: 22  Copynumber: 1.9  Consensus size: 22

        100 AATCTAAAGC

                 *       **       
        110 CTTTTTTTTTTTTTTTTTTCTT
          1 CTTTTCTTTTTTTGGTTTTCTT

                                
        132 CTTTTCTTTTTTTGGTTTTC
          1 CTTTTCTTTTTTTGGTTTTC

        152 AGCCAATTGA


Statistics
Matches: 17,  Mismatches: 3, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  22   17  1.00

ACGTcount: A:0.00, C:0.12, G:0.05, T:0.83


Consensus pattern (22 bp):   
CTTTTCTTTTTTTGGTTTTCTT

Found at i:435 original size:3 final size:3

Alignment explanation


    Indices: 427--453  Score: 54
    Period size: 3  Copynumber: 9.0  Consensus size: 3

        417 TTACTAACAA

                                               
        427 CTC CTC CTC CTC CTC CTC CTC CTC CTC
          1 CTC CTC CTC CTC CTC CTC CTC CTC CTC

        454 GCACGTGCCT


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   24  1.00

ACGTcount: A:0.00, C:0.67, G:0.00, T:0.33


Consensus pattern (3 bp):   
CTC

Done.