Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g02440.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2308
ACGTcount: A:0.26, C:0.19, G:0.22, T:0.33


Found at i:1984 original size:15 final size:15

Alignment explanation


    Indices: 1964--1996  Score: 57
    Period size: 15  Copynumber: 2.2  Consensus size: 15

       1954 GATCATAAAC

                           
       1964 GAAAGTGAAAAGTTG
          1 GAAAGTGAAAAGTTG

                     *     
       1979 GAAAGTGAACAGTTG
          1 GAAAGTGAAAAGTTG

               
       1994 GAA
          1 GAA

       1997 CTTAGCTTCG


Statistics
Matches: 17,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  15   17  1.00

ACGTcount: A:0.45, C:0.03, G:0.33, T:0.18


Consensus pattern (15 bp):   
GAAAGTGAAAAGTTG
Done.