Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g01758.F5

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1932
ACGTcount: A:0.31, C:0.17, G:0.21, T:0.31


Found at i:1579 original size:18 final size:18

Alignment explanation


    Indices: 1558--1610  Score: 61
    Period size: 18  Copynumber: 2.9  Consensus size: 18

       1548 AGAGGGTAAA

                       *   ** 
       1558 GATGATGATGATGACTCT
          1 GATGATGATGAAGACGAT

                     *        
       1576 GATGATGATCAAGACGAT
          1 GATGATGATGAAGACGAT

                       *     
       1594 GATGATGATGAGGACGA
          1 GATGATGATGAAGACGA

       1611 CGACGACGAC


Statistics
Matches: 29,  Mismatches: 6, Indels: 0
        0.83            0.17        0.00

Matches are distributed among these distances:
  18   29  1.00

ACGTcount: A:0.34, C:0.09, G:0.32, T:0.25


Consensus pattern (18 bp):   
GATGATGATGAAGACGAT
Done.