Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g02458.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 994

Length: 1658
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.29


Found at i:301 original size:6 final size:6

Alignment explanation


    Indices: 285--324  Score: 53
    Period size: 6  Copynumber: 6.7  Consensus size: 6

        275 AAGAAAGCCC

                   *             *                *       
        285 AGACGA TGACGA AGACGA TGACGA AGACGA AGAAGA AGAC
          1 AGACGA AGACGA AGACGA AGACGA AGACGA AGACGA AGAC

        325 AATAACCAAG


Statistics
Matches: 28,  Mismatches: 6, Indels: 0
        0.82            0.18        0.00

Matches are distributed among these distances:
   6   28  1.00

ACGTcount: A:0.47, C:0.15, G:0.33, T:0.05


Consensus pattern (6 bp):   
AGACGA

Found at i:302 original size:12 final size:12

Alignment explanation


    Indices: 285--324  Score: 62
    Period size: 12  Copynumber: 3.3  Consensus size: 12

        275 AAGAAAGCCC

                        
        285 AGACGATGACGA
          1 AGACGATGACGA

                        
        297 AGACGATGACGA
          1 AGACGATGACGA

                  *  *  
        309 AGACGAAGAAGA
          1 AGACGATGACGA

                
        321 AGAC
          1 AGAC

        325 AATAACCAAG


Statistics
Matches: 26,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  12   26  1.00

ACGTcount: A:0.47, C:0.15, G:0.33, T:0.05


Consensus pattern (12 bp):   
AGACGATGACGA
Done.