Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g02474.P1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7669
ACGTcount: A:0.28, C:0.17, G:0.21, T:0.34


Found at i:2969 original size:21 final size:22

Alignment explanation


    Indices: 2945--2985  Score: 66
    Period size: 22  Copynumber: 1.9  Consensus size: 22

       2935 TTGTACAATT

                    *             
       2945 TGTTATG-GTAATAAAATTGTG
          1 TGTTATGCCTAATAAAATTGTG

                                
       2966 TGTTATGCCTAATAAAATTG
          1 TGTTATGCCTAATAAAATTG

       2986 ATGAATGGAT


Statistics
Matches: 18,  Mismatches: 1, Indels: 1
        0.90            0.05        0.05

Matches are distributed among these distances:
  21    7  0.39
  22   11  0.61

ACGTcount: A:0.34, C:0.05, G:0.20, T:0.41


Consensus pattern (22 bp):   
TGTTATGCCTAATAAAATTGTG

Done.