Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g00003.P14

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5923
ACGTcount: A:0.27, C:0.18, G:0.19, T:0.36


Found at i:834 original size:31 final size:32

Alignment explanation


    Indices: 781--866  Score: 97
    Period size: 31  Copynumber: 2.7  Consensus size: 32

        771 CGGCGGGGGA

                      *                   *   
        781 TATCCCATTCCAGTG-ATATCCCGGTTCGTTG-T
          1 TATCCCATTCTAG-GAATATCCCGG-TCGTGGTT

                       *  *                 
        813 TATCCCATT-TTGGTATATCCCGGTCGTGGTT
          1 TATCCCATTCTAGGAATATCCCGGTCGTGGTT

                                   
        844 TATCCCATTCTAGGAATATCCCG
          1 TATCCCATTCTAGGAATATCCCG

        867 ATTCCCCACT


Statistics
Matches: 46,  Mismatches: 5, Indels: 6
        0.81            0.09        0.11

Matches are distributed among these distances:
  30    6  0.13
  31   20  0.43
  32   20  0.43

ACGTcount: A:0.17, C:0.27, G:0.19, T:0.37


Consensus pattern (32 bp):   
TATCCCATTCTAGGAATATCCCGGTCGTGGTT

Found at i:4863 original size:45 final size:44

Alignment explanation


    Indices: 4767--4891  Score: 159
    Period size: 42  Copynumber: 2.9  Consensus size: 44

       4757 GATATCCCCG

                *                                       
       4767 TCAATAAAAAAAAAAG--AAGAAAAAGTACTGGGTTAATTGCCT
          1 TCAAAAAAAAAAAAAGAAAAGAAAAAGTACTGGGTTAATTGCCT

               *  *       *                             
       4809 T--GAAGAAAAAAAGGAAAAGAAAAAGTACTGGGTTAATTGCCT
          1 TCAAAAAAAAAAAAAGAAAAGAAAAAGTACTGGGTTAATTGCCT

                                           *    *    
       4851 TCAAAAAAAAAAAAAGAATAAGAAAAAGTACAGGGTAAATT
          1 TCAAAAAAAAAAAAAGAA-AAGAAAAAGTACTGGGTTAATT

       4892 TTCATTCTTC


Statistics
Matches: 69,  Mismatches: 9, Indels: 7
        0.81            0.11        0.08

Matches are distributed among these distances:
  40    9  0.13
  42   28  0.41
  44   12  0.17
  45   20  0.29

ACGTcount: A:0.56, C:0.07, G:0.18, T:0.18


Consensus pattern (44 bp):   
TCAAAAAAAAAAAAAGAAAAGAAAAAGTACTGGGTTAATTGCCT
Done.