Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g00004.C2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 13109
ACGTcount: A:0.29, C:0.18, G:0.20, T:0.33


Found at i:7290 original size:78 final size:78

Alignment explanation


    Indices: 7161--7316  Score: 258
    Period size: 78  Copynumber: 2.0  Consensus size: 78

       7151 CTCATATTCT

                                              *                         *    
       7161 ACCATTAAACCATGATCCCTTGATCTCACCAGCTGGGAGAGTTGGTGATCATGTTGATAATGATC
          1 ACCATTAAACCATGATCCCTTGATCTCACCAGCTAGGAGAGTTGGTGATCATGTTGATAACGATC

                    *    
       7226 ACCATGGAGTTTG
         66 ACCATGGACTTTG

                       *                *                              *     
       7239 ACCATTAAACCCTGATCCCTTGATCTCATCAGCTAGGAGAGTTGGTGATCATGTTGATAGCGATC
          1 ACCATTAAACCATGATCCCTTGATCTCACCAGCTAGGAGAGTTGGTGATCATGTTGATAACGATC

                         
       7304 ACCATGGACTTTG
         66 ACCATGGACTTTG

       7317 TGTACCAGAA


Statistics
Matches: 72,  Mismatches: 6, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  78   72  1.00

ACGTcount: A:0.26, C:0.22, G:0.22, T:0.29


Consensus pattern (78 bp):   
ACCATTAAACCATGATCCCTTGATCTCACCAGCTAGGAGAGTTGGTGATCATGTTGATAACGATC
ACCATGGACTTTG

Found at i:8202 original size:15 final size:15

Alignment explanation


    Indices: 8182--8213  Score: 64
    Period size: 15  Copynumber: 2.1  Consensus size: 15

       8172 TTAAGAACTT

                           
       8182 GTATTCAAGATCCAC
          1 GTATTCAAGATCCAC

                           
       8197 GTATTCAAGATCCAC
          1 GTATTCAAGATCCAC

              
       8212 GT
          1 GT

       8214 GTAATATACA


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   17  1.00

ACGTcount: A:0.31, C:0.25, G:0.16, T:0.28


Consensus pattern (15 bp):   
GTATTCAAGATCCAC
Done.