Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g00004.P16

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 10067
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.30


Found at i:6010 original size:78 final size:78

Alignment explanation


    Indices: 5881--6036  Score: 258
    Period size: 78  Copynumber: 2.0  Consensus size: 78

       5871 CTCATATTCT

                                              *                         *    
       5881 ACCATTAAACCATGATCCCTTGATCTCACCAGCTGGGAGAGTTGGTGATCATGTTGATAATGATC
          1 ACCATTAAACCATGATCCCTTGATCTCACCAGCTAGGAGAGTTGGTGATCATGTTGATAACGATC

                    *    
       5946 ACCATGGAGTTTG
         66 ACCATGGACTTTG

                       *                *                              *     
       5959 ACCATTAAACCCTGATCCCTTGATCTCATCAGCTAGGAGAGTTGGTGATCATGTTGATAGCGATC
          1 ACCATTAAACCATGATCCCTTGATCTCACCAGCTAGGAGAGTTGGTGATCATGTTGATAACGATC

                         
       6024 ACCATGGACTTTG
         66 ACCATGGACTTTG

       6037 TGTACCAGAA


Statistics
Matches: 72,  Mismatches: 6, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  78   72  1.00

ACGTcount: A:0.26, C:0.22, G:0.22, T:0.29


Consensus pattern (78 bp):   
ACCATTAAACCATGATCCCTTGATCTCACCAGCTAGGAGAGTTGGTGATCATGTTGATAACGATC
ACCATGGACTTTG
Done.