Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g00022.F5

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4641
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.28


Found at i:362 original size:18 final size:18

Alignment explanation


    Indices: 322--370  Score: 62
    Period size: 18  Copynumber: 2.7  Consensus size: 18

        312 ATGGTGCTGG

                              
        322 TGATGATGATGATGAAGA
          1 TGATGATGATGATGAAGA

            *               **
        340 CGATGATGATGATGAATT
          1 TGATGATGATGATGAAGA

                    *    
        358 TGATGATGCTGAT
          1 TGATGATGATGAT

        371 TCAGGAGCAG


Statistics
Matches: 26,  Mismatches: 5, Indels: 0
        0.84            0.16        0.00

Matches are distributed among these distances:
  18   26  1.00

ACGTcount: A:0.33, C:0.04, G:0.31, T:0.33


Consensus pattern (18 bp):   
TGATGATGATGATGAAGA

Found at i:2954 original size:24 final size:24

Alignment explanation


    Indices: 2927--2974  Score: 96
    Period size: 24  Copynumber: 2.0  Consensus size: 24

       2917 TGGAAAGCAG

                                    
       2927 GAAGGTGGTGTGAATGGTGTTCTT
          1 GAAGGTGGTGTGAATGGTGTTCTT

                                    
       2951 GAAGGTGGTGTGAATGGTGTTCTT
          1 GAAGGTGGTGTGAATGGTGTTCTT

       2975 TCTTGTGAGA


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  24   24  1.00

ACGTcount: A:0.17, C:0.04, G:0.42, T:0.38


Consensus pattern (24 bp):   
GAAGGTGGTGTGAATGGTGTTCTT
Done.