Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g00036.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 423

Length: 705
ACGTcount: A:0.31, C:0.21, G:0.23, T:0.25


Found at i:111 original size:15 final size:15

Alignment explanation


    Indices: 91--133  Score: 68
    Period size: 15  Copynumber: 2.9  Consensus size: 15

         81 TGGCACCAAA

                           
         91 AGCTGAGAAGAAGCC
          1 AGCTGAGAAGAAGCC

                           
        106 AGCTGAGAAGAAGCC
          1 AGCTGAGAAGAAGCC

               *   *     
        121 AGCGGAGGAGAAG
          1 AGCTGAGAAGAAG

        134 AAGACGGTAG


Statistics
Matches: 26,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  15   26  1.00

ACGTcount: A:0.40, C:0.16, G:0.40, T:0.05


Consensus pattern (15 bp):   
AGCTGAGAAGAAGCC
Done.