Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g00078.F6

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3204
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.30


Found at i:149 original size:3 final size:3

Alignment explanation


    Indices: 141--199  Score: 55
    Period size: 3  Copynumber: 19.7  Consensus size: 3

        131 CGAGCGAGAC

                              *   *  **       *           *       *        
        141 GAA GAA GAA GAA GAT GAC GTT GAA GAT GAA GAA GAG GAA GAG GAA GAA
          1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA

                          
        189 GAA GAA GAA GA
          1 GAA GAA GAA GA

        200 GCCGAGGCTT


Statistics
Matches: 44,  Mismatches: 12, Indels: 0
        0.79            0.21        0.00

Matches are distributed among these distances:
   3   44  1.00

ACGTcount: A:0.54, C:0.02, G:0.37, T:0.07


Consensus pattern (3 bp):   
GAA

Found at i:165 original size:21 final size:21

Alignment explanation


    Indices: 141--196  Score: 67
    Period size: 21  Copynumber: 2.7  Consensus size: 21

        131 CGAGCGAGAC

                          *  * **
        141 GAAGAAGAAGAAGATGACGTT
          1 GAAGAAGAAGAAGAGGAAGAG

                 *               
        162 GAAGATGAAGAAGAGGAAGAG
          1 GAAGAAGAAGAAGAGGAAGAG

                          
        183 GAAGAAGAAGAAGA
          1 GAAGAAGAAGAAGA

        197 AGAGCCGAGG


Statistics
Matches: 29,  Mismatches: 6, Indels: 0
        0.83            0.17        0.00

Matches are distributed among these distances:
  21   29  1.00

ACGTcount: A:0.54, C:0.02, G:0.38, T:0.07


Consensus pattern (21 bp):   
GAAGAAGAAGAAGAGGAAGAG
Done.