Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g00079.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3923
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30


Found at i:3738 original size:20 final size:20

Alignment explanation


    Indices: 3713--3754  Score: 59
    Period size: 21  Copynumber: 2.0  Consensus size: 20

       3703 TCTAACGGGA

                                 
       3713 GTTGGG-TTTTTCTTTTTTGG
          1 GTTGGGCTTTTT-TTTTTTGG

                                 
       3733 GTTGGGCCTTTTTTTTTTTGG
          1 GTTGGG-CTTTTTTTTTTTGG

             
       3754 G
          1 G

       3755 GGGGGGGGGA


Statistics
Matches: 20,  Mismatches: 0, Indels: 3
        0.87            0.00        0.13

Matches are distributed among these distances:
  20    6  0.30
  21    9  0.45
  22    5  0.25

ACGTcount: A:0.00, C:0.07, G:0.31, T:0.62


Consensus pattern (20 bp):   
GTTGGGCTTTTTTTTTTTGG
Done.