Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g00092.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3546
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.28


Found at i:3452 original size:6 final size:6

Alignment explanation


    Indices: 3443--3477  Score: 61
    Period size: 6  Copynumber: 5.8  Consensus size: 6

       3433 AAGAGTTGAG

                       *                            
       3443 TTTTCT TTTTTT TTTTCT TTTTCT TTTTCT TTTTC
          1 TTTTCT TTTTCT TTTTCT TTTTCT TTTTCT TTTTC

       3478 ATGTTATTGA


Statistics
Matches: 27,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
   6   27  1.00

ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86


Consensus pattern (6 bp):   
TTTTCT

Done.