Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g00109.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 411

Length: 686
ACGTcount: A:0.29, C:0.19, G:0.22, T:0.30


Found at i:534 original size:6 final size:6

Alignment explanation


    Indices: 525--554  Score: 51
    Period size: 6  Copynumber: 5.0  Consensus size: 6

        515 CCCAAAAATT

                 *                            
        525 AAAAAA AAAAAG AAAAAG AAAAAG AAAAAG
          1 AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG

        555 CTTTTGTTGT


Statistics
Matches: 23,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
   6   23  1.00

ACGTcount: A:0.87, C:0.00, G:0.13, T:0.00


Consensus pattern (6 bp):   
AAAAAG

Done.