Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g01777.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6046
ACGTcount: A:0.30, C:0.17, G:0.24, T:0.30


Found at i:5080 original size:20 final size:21

Alignment explanation


    Indices: 5057--5096  Score: 55
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       5047 GAAGAGTTTC

                *                
       5057 AGGATAAAAT-GTGTTTTTGT
          1 AGGAGAAAATGGTGTTTTTGT

                    *           
       5077 AGGAGAAAGTGGTGTTTTTG
          1 AGGAGAAAATGGTGTTTTTG

       5097 AGGGAAGAAA


Statistics
Matches: 17,  Mismatches: 2, Indels: 1
        0.85            0.10        0.05

Matches are distributed among these distances:
  20    8  0.47
  21    9  0.53

ACGTcount: A:0.28, C:0.00, G:0.33, T:0.40


Consensus pattern (21 bp):   
AGGAGAAAATGGTGTTTTTGT
Done.