Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g00128.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 357

Length: 595
ACGTcount: A:0.35, C:0.14, G:0.15, T:0.36


Found at i:274 original size:12 final size:11

Alignment explanation


    Indices: 252--277  Score: 52
    Period size: 11  Copynumber: 2.4  Consensus size: 11

        242 TTCCAATTTC

                       
        252 TTTTGTTTTTT
          1 TTTTGTTTTTT

                       
        263 TTTTGTTTTTT
          1 TTTTGTTTTTT

                
        274 TTTT
          1 TTTT

        278 CACTATTATT


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  11   15  1.00

ACGTcount: A:0.00, C:0.00, G:0.08, T:0.92


Consensus pattern (11 bp):   
TTTTGTTTTTT
Done.