Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g00132.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 766

Length: 1277
ACGTcount: A:0.29, C:0.19, G:0.20, T:0.32


Found at i:1036 original size:24 final size:24

Alignment explanation


    Indices: 1004--1054  Score: 102
    Period size: 24  Copynumber: 2.1  Consensus size: 24

        994 ACTTCTTAAT

                                    
       1004 AGTCCTTTGATGTAGAACAATGGA
          1 AGTCCTTTGATGTAGAACAATGGA

                                    
       1028 AGTCCTTTGATGTAGAACAATGGA
          1 AGTCCTTTGATGTAGAACAATGGA

               
       1052 AGT
          1 AGT

       1055 GAACAAGTGT


Statistics
Matches: 27,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  24   27  1.00

ACGTcount: A:0.33, C:0.12, G:0.25, T:0.29


Consensus pattern (24 bp):   
AGTCCTTTGATGTAGAACAATGGA

Found at i:1135 original size:12 final size:12

Alignment explanation


    Indices: 1108--1145  Score: 51
    Period size: 12  Copynumber: 3.2  Consensus size: 12

       1098 TAGTACTTTC

                  *    *
       1108 TTTTTCCTTTTG
          1 TTTTTCTTTTTA

                        
       1120 TTTTT-TTTTTA
          1 TTTTTCTTTTTA

                        
       1131 TTTTTCTTTTTA
          1 TTTTTCTTTTTA

               
       1143 TTT
          1 TTT

       1146 CTCCCTATTA


Statistics
Matches: 23,  Mismatches: 2, Indels: 2
        0.85            0.07        0.07

Matches are distributed among these distances:
  11    9  0.39
  12   14  0.61

ACGTcount: A:0.05, C:0.08, G:0.03, T:0.84


Consensus pattern (12 bp):   
TTTTTCTTTTTA
Done.