Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g00134.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2683
ACGTcount: A:0.30, C:0.16, G:0.23, T:0.31


Found at i:1838 original size:115 final size:115

Alignment explanation


    Indices: 1631--1839  Score: 373
    Period size: 115  Copynumber: 1.8  Consensus size: 115

       1621 TGGAAGTGGA

                *                                               *            
       1631 TATGTATTGGTGCCTGCTAAAATCAAGGTGTTTTTTATGGAGAATTCATACTTATAATATAGCAA
          1 TATGCATTGGTGCCTGCTAAAATCAAGGTGTTTTTTATGGAGAATTCATACTAATAATATAGCAA

                                                              
       1696 GAATTCGGAATATGTGGAGAAGGAAGCTAGTACAACGGCCATTATGCCAT
         66 GAATTCGGAATATGTGGAGAAGGAAGCTAGTACAACGGCCATTATGCCAT

                                *                      *  *                  
       1746 TATGCATTGGTGCCTGCTAAGATCAAGGTGTTTTTTATGGAGAGTTGATACTAATAATATAGCAA
          1 TATGCATTGGTGCCTGCTAAAATCAAGGTGTTTTTTATGGAGAATTCATACTAATAATATAGCAA

                                         
       1811 GAATTCGGAATATGTGGAGAAGGAAGCTA
         66 GAATTCGGAATATGTGGAGAAGGAAGCTA

       1840 AACTTTTGCA


Statistics
Matches: 89,  Mismatches: 5, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
 115   89  1.00

ACGTcount: A:0.33, C:0.11, G:0.24, T:0.31


Consensus pattern (115 bp):   
TATGCATTGGTGCCTGCTAAAATCAAGGTGTTTTTTATGGAGAATTCATACTAATAATATAGCAA
GAATTCGGAATATGTGGAGAAGGAAGCTAGTACAACGGCCATTATGCCAT
Done.