Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g01779.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2149
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.29


Found at i:2063 original size:6 final size:6

Alignment explanation


    Indices: 2048--2080  Score: 59
    Period size: 6  Copynumber: 5.7  Consensus size: 6

       2038 CAGATTGTTA

                                                   
       2048 GTTTTT -TTTTT GTTTTT GTTTTT GTTTTT GTTT
          1 GTTTTT GTTTTT GTTTTT GTTTTT GTTTTT GTTT

       2081 GCTGCATATC


Statistics
Matches: 26,  Mismatches: 0, Indels: 2
        0.93            0.00        0.07

Matches are distributed among these distances:
   5    5  0.19
   6   21  0.81

ACGTcount: A:0.00, C:0.00, G:0.15, T:0.85


Consensus pattern (6 bp):   
GTTTTT

Done.