Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g00152.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4047
ACGTcount: A:0.30, C:0.16, G:0.20, T:0.34


Found at i:63 original size:3 final size:3

Alignment explanation


    Indices: 48--96  Score: 80
    Period size: 3  Copynumber: 16.0  Consensus size: 3

         38 AAACACTTCC

                    *                                                   
         48 CTT CTT TTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CGTT
          1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT C-TT

               
         94 CTT
          1 CTT

         97 TTCATTTTTC


Statistics
Matches: 43,  Mismatches: 2, Indels: 2
        0.91            0.04        0.04

Matches are distributed among these distances:
   3   40  0.93
   4    3  0.07

ACGTcount: A:0.00, C:0.31, G:0.02, T:0.67


Consensus pattern (3 bp):   
CTT

Done.