Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g00162.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2453
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.30


Found at i:819 original size:75 final size:75

Alignment explanation


    Indices: 601--832  Score: 322
    Period size: 75  Copynumber: 3.1  Consensus size: 75

        591 CCATTACTGA

                *        *    *                *                             
        601 AACCGATGATTCCATTGTTAAAACCGGTGAGGATTTGGTTTCTTCGCCGGCTCCGGCAAT-TCCC
          1 AACCAATGATTCCGTTGTAAAAACCGGTGAGGATTCGGTTTCTTCGCCGGCTCCGGCAATGT-CC

                **     
        665 CCTGCATTAGC
         65 CCTGTTTTAGC

                                                              *              
        676 AACCAATGATTCCGTTGTAAAAACCGGTGAGGATTCGGTTTCTTCGCCGGTTCCGGCAATGTCCC
          1 AACCAATGATTCCGTTGTAAAAACCGGTGAGGATTCGGTTTCTTCGCCGGCTCCGGCAATGTCCC

                      
        741 CTGTTTTAGC
         66 CTGTTTTAGC

                        *            *                     *      *  *       
        751 AACCAATGATTCTGTTGTAAAAACCAGTGAGGATTCGGTTTCTTCGCTGGCTCCAGCTATGTCCC
          1 AACCAATGATTCCGTTGTAAAAACCGGTGAGGATTCGGTTTCTTCGCCGGCTCCGGCAATGTCCC

                 *    
        816 CTGTTGTAGC
         66 CTGTTTTAGC

             *     
        826 ACCCAAT
          1 AACCAAT

        833 CCGGTTACTA


Statistics
Matches: 141,  Mismatches: 15, Indels: 2
        0.89            0.09        0.01

Matches are distributed among these distances:
  75  140  0.99
  76    1  0.01

ACGTcount: A:0.21, C:0.26, G:0.22, T:0.30


Consensus pattern (75 bp):   
AACCAATGATTCCGTTGTAAAAACCGGTGAGGATTCGGTTTCTTCGCCGGCTCCGGCAATGTCCC
CTGTTTTAGC
Done.