Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g00172.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 952

Length: 1588
ACGTcount: A:0.29, C:0.17, G:0.20, T:0.35


Found at i:1273 original size:13 final size:13

Alignment explanation


    Indices: 1255--1282  Score: 56
    Period size: 13  Copynumber: 2.2  Consensus size: 13

       1245 TACAAAGGTC

                         
       1255 TTCTTTTTTTTTT
          1 TTCTTTTTTTTTT

                         
       1268 TTCTTTTTTTTTT
          1 TTCTTTTTTTTTT

              
       1281 TT
          1 TT

       1283 TTGGGGGGGG


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   15  1.00

ACGTcount: A:0.00, C:0.07, G:0.00, T:0.93


Consensus pattern (13 bp):   
TTCTTTTTTTTTT

Found at i:1277 original size:16 final size:16

Alignment explanation


    Indices: 1253--1284  Score: 57
    Period size: 15  Copynumber: 2.1  Consensus size: 16

       1243 TATACAAAGG

                            
       1253 TCTTCTTTTTTTTTTT
          1 TCTTCTTTTTTTTTTT

                            
       1269 TCTT-TTTTTTTTTTT
          1 TCTTCTTTTTTTTTTT

             
       1284 T
          1 T

       1285 GGGGGGGGGT


Statistics
Matches: 16,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  15   12  0.75
  16    4  0.25

ACGTcount: A:0.00, C:0.09, G:0.00, T:0.91


Consensus pattern (16 bp):   
TCTTCTTTTTTTTTTT
Done.