Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g00179.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3756
ACGTcount: A:0.31, C:0.20, G:0.19, T:0.30


Found at i:2954 original size:45 final size:45

Alignment explanation


    Indices: 2890--2980  Score: 182
    Period size: 45  Copynumber: 2.0  Consensus size: 45

       2880 CACACTCGTC

                                                         
       2890 CGGACATAGCTTTTGGAGTAAGTGTTATAAGTCAATTTATGCATG
          1 CGGACATAGCTTTTGGAGTAAGTGTTATAAGTCAATTTATGCATG

                                                         
       2935 CGGACATAGCTTTTGGAGTAAGTGTTATAAGTCAATTTATGCATG
          1 CGGACATAGCTTTTGGAGTAAGTGTTATAAGTCAATTTATGCATG

             
       2980 C
          1 C

       2981 TCCTAGGGAG


Statistics
Matches: 46,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  45   46  1.00

ACGTcount: A:0.29, C:0.12, G:0.24, T:0.35


Consensus pattern (45 bp):   
CGGACATAGCTTTTGGAGTAAGTGTTATAAGTCAATTTATGCATG
Done.