Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g00191.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 797

Length: 1329
ACGTcount: A:0.31, C:0.18, G:0.20, T:0.31


Found at i:1175 original size:3 final size:3

Alignment explanation


    Indices: 1167--1209  Score: 77
    Period size: 3  Copynumber: 14.3  Consensus size: 3

       1157 AAAGCCTAAG

                         *                                           
       1167 TAA TAA TAA TGA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
          1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T

       1210 GTTCCCGAGT


Statistics
Matches: 38,  Mismatches: 2, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
   3   38  1.00

ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35


Consensus pattern (3 bp):   
TAA

Done.