Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g00203.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3642
ACGTcount: A:0.34, C:0.18, G:0.22, T:0.27


Found at i:3011 original size:15 final size:16

Alignment explanation


    Indices: 2973--3019  Score: 51
    Period size: 15  Copynumber: 3.0  Consensus size: 16

       2963 CAGCTATAGG

                     *      
       2973 AAACAAAACCCCAAAA
          1 AAACAAAACACCAAAA

                    *      *
       2989 AAA-AAAAAACCAAAT
          1 AAACAAAACACCAAAA

                      *     
       3004 AAACAAAACAACAAAA
          1 AAACAAAACACCAAAA

       3020 GCAAGAAAAA


Statistics
Matches: 24,  Mismatches: 6, Indels: 2
        0.75            0.19        0.06

Matches are distributed among these distances:
  15   12  0.50
  16   12  0.50

ACGTcount: A:0.77, C:0.21, G:0.00, T:0.02


Consensus pattern (16 bp):   
AAACAAAACACCAAAA
Done.