Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g00213.N2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 784

Length: 1307
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.31


Found at i:1258 original size:51 final size:51

Alignment explanation


    Indices: 1182--1285  Score: 181
    Period size: 51  Copynumber: 2.0  Consensus size: 51

       1172 ATTGGTTCTT

                                                  *            
       1182 TGAAACTGCACAAGTCCATCTATGACCTGAAACAAGCATCACAAGCTTGGC
          1 TGAAACTGCACAAGTCCATCTATGACCTGAAACAAGCACCACAAGCTTGGC

                           *                           *       
       1233 TGAAACTGCACAAGTTCATCTATGACCTGAAACAAGCACCACAGGCTTGGC
          1 TGAAACTGCACAAGTCCATCTATGACCTGAAACAAGCACCACAAGCTTGGC

              
       1284 TG
          1 TG

       1286 GAGCTAAGTA


Statistics
Matches: 50,  Mismatches: 3, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  51   50  1.00

ACGTcount: A:0.34, C:0.27, G:0.19, T:0.20


Consensus pattern (51 bp):   
TGAAACTGCACAAGTCCATCTATGACCTGAAACAAGCACCACAAGCTTGGC
Done.