Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g00216.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 558

Length: 930
ACGTcount: A:0.32, C:0.16, G:0.23, T:0.29


Found at i:787 original size:2 final size:2

Alignment explanation


    Indices: 780--813  Score: 59
    Period size: 2  Copynumber: 16.5  Consensus size: 2

        770 TTTAGTTTTA

                                                              
        780 AT AT AT AT AT AT AT AT AT AT AT AT AT AT GAT AT A
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT -AT AT A

        814 AATAAAGGCC


Statistics
Matches: 31,  Mismatches: 0, Indels: 2
        0.94            0.00        0.06

Matches are distributed among these distances:
   2   29  0.94
   3    2  0.06

ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47


Consensus pattern (2 bp):   
AT

Done.